makebiolik

Same structure as <code>makeneurolik()</code>, but with a different default separation
parameter. This can be used to model simple biological switching systems
or coarse-grained gene expression states.

Variational flow-based methods for modeling rare events using
Kullback–Leibler (KL) divergence, normalizing flows, Girsanov change of
measure, and Freidlin–Wentzell action functionals. The package provides
tools for rare-event inference, minimum-action paths, and quasi-potential
computation in stochastic dynamical systems. Methods are based on
Rezende and Mohamed (2015) <doi:10.48550/arXiv.1505.05770>,
Girsanov (1960) <doi:10.1137/1105027>,
and Freidlin and Wentzell (2012, ISBN:978-0387955477).

Pietro Piu

rareflow

Variational Flow-Based Inference for Rare Events and Large
Deviations

makebiolik function

<dl><dt>a</dt>
<dd>Separation parameter controlling the spacing between the two logits.</dd></dl>

Arguments

Biological Two-Separator Likelihood — makebiolik

<dl>

<dt>a</dt>
<dd>Separation parameter controlling the spacing between the two logits.</dd>

</dl>

makebiolik: Biological Two-Separator Likelihood

Description

Usage

Value

Arguments