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rarestR (version 1.1.1)

Rarefaction-Based Species Richness Estimator

Description

Calculate rarefaction-based alpha- and beta-diversity. Offer parametric extrapolation to estimate the total expected species in a single community and the total expected shared species between two communities. Visualize the curve-fitting for these estimators.

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Install

install.packages('rarestR')

Monthly Downloads

324

Version

1.1.1

License

MIT + file LICENSE

Issues

0

Pull Requests

0

Stars

2

Forks

0

Maintainer

Peng Zhao

Last Published

March 30th, 2025

Functions in rarestR (1.1.1)

share

Dataset for rarestR.
tess

Calculate the Total number of Expected Shared Species between two samples.
ess

Compute dissimilarity estimates between two samples based on Expected Species Shared (ESS)-measures, using abundance data for the species contained in each samples
print.rarestr

Print the "rarestr" class
plot_tess

Plot fitted curve for TESS
es

Calculate the Expected Species
plot_tes

Plot fitted curve for TES
plot.rarestr

Plot the "rarestr" class
tes

Calculation of Total Expected Species base on ESa, ESb and their average value