bm_loglik_ancestors_poly

phylogenetic tree of class <code>"phylo"</code>.

tree

list of polygons in <code><a href="/link/owin.object?package=rase&version=0.2-21&to=spatstat" rd-options="spatstat" data-mini-rdoc="spatstat::owin.object">owin.object</a></code> format.

polygons

params

degree of the one-dimensional Gauss-Legendre quadrature rule (default = 20) as given by <code><a href="/link/polyCub.SV?package=rase&version=0.2-21" rd-options="" data-mini-rdoc="rase::polyCub.SV">polyCub.SV</a></code> in package polyCub.

internal

The rase package primarily implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015). Historical Biogeography Using Species Geographical Ranges. Systematic biology, 64(6), 1059-1073. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.

bm_loglik_ancestors_poly: Fast likelihood of ancestors using polygons

Description

Usage

Arguments

Value

References

See Also