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ravecore (version 0.1.0)

Auxiliary_electrode: Class definition for auxiliary channels

Description

Class definition for auxiliary channels

Class definition for auxiliary channels

Arguments

Value

If simplify is enabled, and only one block is loaded, then the result will be a vector (type="voltage") or a matrix (others), otherwise the result will be a named list where the names are the blocks.

Super classes

ravepipeline::RAVESerializable -> ravecore::RAVEAbstarctElectrode -> Auxiliary_electrode

Active bindings

h5_fname

'HDF5' file name

valid

whether current electrode is valid: subject exists and contains current electrode or reference; subject electrode type matches with current electrode type

raw_sample_rate

voltage sample rate

preprocess_info

preprocess information

voltage_file

path to voltage 'HDF5' file

Methods

Inherited methods

Method @marshal()

Internal method

Usage

Auxiliary_electrode$@marshal(...)

Arguments

...

internal arguments

Method @unmarshal()

Internal method

Usage

Auxiliary_electrode$@unmarshal(object)

Arguments

object, ...

internal arguments

Method print()

print electrode summary

Usage

Auxiliary_electrode$print()

Method set_reference()

set reference for current electrode

Usage

Auxiliary_electrode$set_reference(reference)

Arguments

reference

either NULL or LFP_electrode instance

Method new()

constructor

Usage

Auxiliary_electrode$new(subject, number, quiet = FALSE)

Arguments

subject, number, quiet

see constructor in RAVEAbstarctElectrode

Method .load_noref_voltage()

load non-referenced voltage (internally used)

Usage

Auxiliary_electrode$.load_noref_voltage(reload = FALSE)

Arguments

reload

whether to reload cache

srate

voltage signal sample rate

Method .load_raw_voltage()

load raw voltage (no process)

Usage

Auxiliary_electrode$.load_raw_voltage(reload = FALSE)

Arguments

reload

whether to reload cache

Method load_data_with_epochs()

method to load electrode data

Usage

Auxiliary_electrode$load_data_with_epochs(type = c("raw-voltage", "voltage"))

Arguments

type

data type such as "power", "phase", "voltage", "wavelet-coefficient", and "raw-voltage". For "power", "phase", and "wavelet-coefficient", 'Wavelet' transforms are required. For "voltage", 'Notch' filters must be applied. All these types except for "raw-voltage" will be referenced. For "raw-voltage", no reference will be performed since the data will be the "raw" signal (no processing).

Method load_dimnames_with_epochs()

get expected dimension names

Usage

Auxiliary_electrode$load_dimnames_with_epochs(
  type = c("raw-voltage", "voltage")
)

Arguments

type

see load_data_with_epochs

Method load_data_with_blocks()

load electrode block-wise data (with no reference), useful when epoch is absent

Usage

Auxiliary_electrode$load_data_with_blocks(
  blocks,
  type = c("raw-voltage", "voltage"),
  simplify = TRUE
)

Arguments

blocks

session blocks

type

data type such as "power", "phase", "voltage", "raw-voltage" (with no filters applied, as-is from imported), "wavelet-coefficient". Note that if type is "raw-voltage", then the data only needs to be imported; for "voltage" data, 'Notch' filters must be applied; for all other types, 'Wavelet' transforms are required.

simplify

whether to simplify the result

Method load_dim_with_blocks()

get expected dimension information for block-based loader

Usage

Auxiliary_electrode$load_dim_with_blocks(
  blocks,
  type = c("raw-voltage", "voltage")
)

Arguments

blocks, type

see load_data_with_blocks

Method clear_cache()

method to clear cache on hard drive

Usage

Auxiliary_electrode$clear_cache(...)

Arguments

...

ignored

Method clear_memory()

method to clear memory

Usage

Auxiliary_electrode$clear_memory(...)

Arguments

...

ignored

Method clone()

The objects of this class are cloneable with this method.

Usage

Auxiliary_electrode$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.