pipeline_install

pipeline_install_local

pipeline_install_github

Includes multiple cross-platform read/write interfaces for
'RAVE' project. 'RAVE' stands for "R analysis and visualization of human
intracranial electroencephalography data". The whole project aims at
providing powerful free-source package that analyze brain recordings from
patients with electrodes placed on the cortical surface or inserted into
the brain. 'raveio' as part of this project provides tools to read/write
neurophysiology data from/to 'RAVE' file structure, as well as several
popular formats including 'EDF(+)', 'Matlab', 'BIDS-iEEG', and 'HDF5',
etc. Documentation and examples about 'RAVE' project are provided at
<https://openwetware.org/wiki/RAVE>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("raveio")' for
details.

Zhengjia Wang

raveio

File-System Toolbox for RAVE Project

Beauchamp lab 

pipeline_install function

<dl><dt>src</dt>
<dd>pipeline directory</dd>
<dt>to</dt>
<dd>installation path; choices are <code>'default'</code>, <code>'custom'</code>,
<code>'workdir'</code>, and <code>'tempdir'</code>. Please specify pipeline root path
via <code>pipeline_root</code> when <code>'custom'</code> is used.</dd>
<dt>upgrade</dt>
<dd>whether to upgrade the dependence; default is <code>FALSE</code>
for stability, however, it is highly recommended to upgrade your
dependencies</dd>
<dt>force</dt>
<dd>whether to force installing the pipelines</dd>
<dt>...</dt>
<dd>other parameters not used</dd>
<dt>repo</dt>
<dd>'Github' repository in user-repository combination, for example,
<code>'rave-ieeg/rave-pipeline'</code></dd></dl>

Arguments

Install 'RAVE' pipelines — pipeline_install

<dl>

<dt>src</dt>
<dd>pipeline directory</dd>


<dt>to</dt>
<dd>installation path; choices are <code>'default'</code>, <code>'custom'</code>,
<code>'workdir'</code>, and <code>'tempdir'</code>. Please specify pipeline root path
via <code>pipeline_root</code> when <code>'custom'</code> is used.</dd>


<dt>upgrade</dt>
<dd>whether to upgrade the dependence; default is <code>FALSE</code>
for stability, however, it is highly recommended to upgrade your
dependencies</dd>


<dt>force</dt>
<dd>whether to force installing the pipelines</dd>


<dt>...</dt>
<dd>other parameters not used</dd>


<dt>repo</dt>
<dd>'Github' repository in user-repository combination, for example,
<code>'rave-ieeg/rave-pipeline'</code></dd>

</dl>

pipeline_install: Install 'RAVE' pipelines

Description

Usage

Value

Arguments