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rbamtools (version 2.1.0)

Reading, manipulation and writing BAM (Binary alignment) files.

Description

This package provides an interface to functions of the 'SAMtools' C-Library by Heng Li.

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Version

Install

install.packages('rbamtools')

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Version

2.1.0

License

Artistic-2.0

Maintainer

Wolfgang Kaisers

Last Published

September 27th, 2012

Functions in rbamtools (2.1.0)

bamAlign-class

Class "bamAlign"

filename-methods

Reading filename from bamReader or bamWriter

getHeaderText-methods

getHeaderText Assembling member data into Header-Text

bamHeaderText-class

Class "bamHeader"

getVal

getVal(object,members)

headerReadGroup-class

Class "headerReadGroup"

setVal

setVal(object,members,values)

bamRange

bamRange(bamReader, coordinates,complex=FALSE)

bamClose-methods

bamClose(bamReader), bamClose(bamWriter)

Reading, writing and manipulating BAM-file format.

Class "headerProgram"

as.data.frame-methods

Conversion of bamRange or gapList into a data.frame

isOpen-methods

isOpen(bamReader),isOpen(bamWriter)

getNextAlign-methods

getNextAlign: Retrieving next align from bamReader or bamRange