attach_file

attach_file.libbi

a <code><a rd-options="" href="/link/libbi?package=rbi&version=0.10.4" data-mini-rdoc="rbi::libbi">libbi</a></code> object

the type of the file to attach, one of "output", "obs", "input" or "init"

file

name of the file to attach, or a list of data frames that contain the outputs

data

attach the file even if one like this already exists in the libbi object

force

any options to <code><a rd-options="" href="/link/bi_write?package=rbi&version=0.10.4" data-mini-rdoc="rbi::bi_write">bi_write</a></code> (e.g., 'time_dim')

Deprecated (use 'attach' instead). Adds an (output, obs, etc.) file to a <code>libbi</code> object. This is useful to recreate a <code>libbi</code> object from the model and output files of a previous run

internal

Provides a complete interface to 'LibBi', a library for Bayesian inference (see <http://libbi.org> and <doi:10.18637/jss.v067.i10> for more information). This includes functions for manipulating 'LibBi' models, for reading and writing 'LibBi' input/output files, for converting 'LibBi' output to provide traces for use with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

attach_file function

<dl><dt>x</dt>
<dd>a <code>libbi</code> object</dd>
<dt>file</dt>
<dd>the type of the file to attach, one of "output", "obs", "input" or "init"</dd>
<dt>data</dt>
<dd>name of the file to attach, or a list of data frames that contain the outputs</dd>
<dt>force</dt>
<dd>attach the file even if one like this already exists in the libbi object</dd>
<dt>...</dt>
<dd>any options to <code>bi_write</code> (e.g., 'time_dim')</dd></dl>

Arguments

Deprecated (use 'attach' instead). Attach a new file or data set to a libbi object — attach_file

<dl>

<dt>x</dt>
<dd>a <code>libbi</code> object</dd>


<dt>file</dt>
<dd>the type of the file to attach, one of "output", "obs", "input" or "init"</dd>


<dt>data</dt>
<dd>name of the file to attach, or a list of data frames that contain the outputs</dd>


<dt>force</dt>
<dd>attach the file even if one like this already exists in the libbi object</dd>


<dt>...</dt>
<dd>any options to <code>bi_write</code> (e.g., 'time_dim')</dd>

</dl>

attach_file: Deprecated (use 'attach' instead). Attach a new file or data set to a `libbi` object

Description

Usage

Value

Arguments