bi_generate_dataset

arguments to be passed to <code><a rd-options="" href="/link/sample.libbi?package=rbi&version=0.10.4" data-mini-rdoc="rbi::sample.libbi">sample.libbi</a></code>, especially 'model', 'end_time' and 'seed'.

real; if given, <code>noutputs</code> will be set so that there is output every <code>output_every</code> time steps; if set to 0, only generate an output at the final time

output_every

This is a wrapper around <code>libbi sample --target joint --nsamples 1</code>, to generate a
synthetic dataset from a model. Parameters can be passed via the 'init' option
(see <code>run.libbi</code>, otherwise they are generated from the prior specified
in the model. The end time should be specified using the "end_time" option. If this is not given,
only a parameter set is sampled. Use the 'noutputs' or 'output_every' options
to control the number of data points being generated. By default,
output_every is set to 1.

Provides a complete interface to 'LibBi', a library for Bayesian inference (see <http://libbi.org> and <doi:10.18637/jss.v067.i10> for more information). This includes functions for manipulating 'LibBi' models, for reading and writing 'LibBi' input/output files, for converting 'LibBi' output to provide traces for use with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

bi_generate_dataset function

<dl><dt>...</dt>
<dd>arguments to be passed to <code>sample.libbi</code>, especially 'model', 'end_time' and 'seed'.</dd>
<dt>output_every</dt>
<dd>real; if given, <code>noutputs</code> will be set so that there is output every <code>output_every</code> time steps; if set to 0, only generate an output at the final time</dd></dl>

Arguments

Bi Generate Dataset — bi_generate_dataset

<dl>

<dt>...</dt>
<dd>arguments to be passed to <code>sample.libbi</code>, especially 'model', 'end_time' and 'seed'.</dd>


<dt>output_every</dt>
<dd>real; if given, <code>noutputs</code> will be set so that there is output every <code>output_every</code> time steps; if set to 0, only generate an output at the final time</dd>

</dl>

bi_generate_dataset: Bi Generate Dataset

Description

Usage

Value

Arguments