assert_output

assert_output.libbi

a <code><a rd-options="" href="/link/libbi?package=rbi&version=0.9.1" data-mini-rdoc="rbi::libbi">libbi</a></code> object

This checks that the <code><a rd-options="" href="/link/libbi?package=rbi&version=0.9.1" data-mini-rdoc="rbi::libbi">libbi</a></code> object given has been run (via <code><a rd-options="" href="/link/sample?package=rbi&version=0.9.1" data-mini-rdoc="rbi::sample">sample</a></code>, <code><a rd-options="" href="/link/filter?package=rbi&version=0.9.1" data-mini-rdoc="rbi::filter">filter</a></code> or <code><a rd-options="" href="/link/optimize?package=rbi&version=0.9.1" data-mini-rdoc="rbi::optimize">optimize</a></code>)) and the output file has not been modified since.

internal

Provides a complete R interface to LibBi, a library for Bayesian inference (see <http://libbi.org> and <doi:10.18637/jss.v067.i10> for more information). This includes functions for manipulating LibBi models, for reading and writing LibBi input/output files, for converting LibBi output to provide traces for use with the coda package, and for running LibBi from R.

Sebastian Funk

R Interface to LibBi

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

assert_output function

a <code><a rd-options='' href='libbi'>libbi</a></code> object

This checks that the <code><a rd-options='' href='libbi'>libbi</a></code> object given has been run (via <code><a rd-options='' href='sample'>sample</a></code>, <code><a rd-options='' href='filter'>filter</a></code> or <code><a rd-options='' href='optimize'>optimize</a></code>)) and the output file has not been modified since.

assert_output: Check that a LibBi wrapper has valid output

Description

Usage

Arguments