extract_sample

a <code><a rd-options="" href="/link/libbi?package=rbi&version=0.9.1" data-mini-rdoc="rbi::libbi">libbi</a></code> object which has been run, or a
list of data frames containing parameter traces (as returned by
from <code>bi_read</code>); if it is not a <code><a rd-options="" href="/link/libbi?package=rbi&version=0.9.1" data-mini-rdoc="rbi::libbi">libbi</a></code>
object, either 'all' must be TRUE or a model given

iteration to extract; if set to "last", the last sample will be extracted. If not given a random sample will be extracted

parameters to <code>bi_read</code> (e.g., dimensions)

This function takes the provided <code><a rd-options="" href="/link/libbi?package=rbi&version=0.9.1" data-mini-rdoc="rbi::libbi">libbi</a></code>
 results and extracts a data frame.

Provides a complete R interface to LibBi, a library for Bayesian inference (see <http://libbi.org> and <doi:10.18637/jss.v067.i10> for more information). This includes functions for manipulating LibBi models, for reading and writing LibBi input/output files, for converting LibBi output to provide traces for use with the coda package, and for running LibBi from R.

Sebastian Funk

R Interface to LibBi

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

extract_sample function

a <code><a rd-options='' href='libbi'>libbi</a></code> object which has been run, or a
list of data frames containing parameter traces (as returned by
from <code>bi_read</code>); if it is not a <code><a rd-options='' href='libbi'>libbi</a></code>
object, either 'all' must be TRUE or a model given

This function takes the provided <code><a rd-options='' href='libbi'>libbi</a></code>
 results and extracts a data frame.

extract_sample: Extract a sample from a `LibBi` run.

Description

Usage

Arguments

Value