save_libbi

save_libbi.libbi

This saves all options, files and outputs of a <code>LibBi</code> run to an RDS
 file specified

Provides a complete interface to 'LibBi', a library for Bayesian
inference (see <https://libbi.org> and Murray, 2015
<doi:10.18637/jss.v067.i10> for more information). This includes functions
for manipulating 'LibBi' models, for reading and writing 'LibBi'
input/output files, for converting 'LibBi' output to provide traces for use
with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

save_libbi function

<dl><dt>x</dt>
<dd>a <code>libbi</code> object</dd>
<dt>name</dt>
<dd>name of the RDS file(s) to save to. If <code>split=TRUE</code>, this
will be taken as a base for the names of the files to be created, e.g.
'dir/name.rds' to create files of the form name_....rds in directory 'dir'.</dd>
<dt>supplement</dt>
<dd>any supplementary data to save</dd>
<dt>split</dt>
<dd>Logical, defaults to <code>FALSE</code>. Should the objects from the
<code>LibBi</code> run be saved separately in a folder.</dd>
<dt>...</dt>
<dd>any options to <code><a href="/link/saveRDS?package=rbi&version=1.0.0" data-mini-rdoc="rbi::saveRDS">saveRDS</a></code></dd></dl>

Arguments

Write results of a LibBi run to an RDS file — save_libbi

<dl>

<dt>x</dt>
<dd>a <code>libbi</code> object</dd>


<dt>name</dt>
<dd>name of the RDS file(s) to save to. If <code>split=TRUE</code>, this
will be taken as a base for the names of the files to be created, e.g.
'dir/name.rds' to create files of the form name_....rds in directory 'dir'.</dd>


<dt>supplement</dt>
<dd>any supplementary data to save</dd>


<dt>split</dt>
<dd>Logical, defaults to <code>FALSE</code>. Should the objects from the
<code>LibBi</code> run be saved separately in a folder.</dd>


<dt>...</dt>
<dd>any options to <code><a href='https://rdrr.io/r/base/readRDS.html'>saveRDS</a></code></dd>

</dl>

save_libbi: Write results of a `LibBi` run to an RDS file

Description

Usage

Value

Arguments