Since JASPAR release 2010, the matrix profiles are versioned; So, a matrix profile Identifier has "base_id.version" naming schema. Using this function you can retrieve a list of matrix profiles associated with a base (stable) ID.
rba_jaspar_matrix_versions(base_id, order = NULL, ...)A data frame of matrix profiles' versions information.
Character: A base (stable) Identifier. A matrix profile identifier has "base_id.version" naming schema
Character: A character string or a vector of character strings
of field names that will be used to order the results.
Providing multiple field names is supported. You can also use prefix
"-" before a field name to indicate reverse ordering.
rbioapi option(s). See rba_options's
arguments manual for more information on available options.
"GET https://jaspar.elixir.no/api/v1/matrix/{base_id}/versions/"
Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059
Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804
Other "JASPAR":
rba_jaspar_collections(),
rba_jaspar_collections_matrices(),
rba_jaspar_matrix(),
rba_jaspar_matrix_search(),
rba_jaspar_releases(),
rba_jaspar_sites(),
rba_jaspar_species(),
rba_jaspar_species_matrices(),
rba_jaspar_taxons(),
rba_jaspar_taxons_matrices(),
rba_jaspar_tffm(),
rba_jaspar_tffm_search()
# \donttest{
rba_jaspar_matrix_versions("MA0600")
# }
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