JASPAR organizes matrix profiles from multiple species in six taxonomic groups. Use this function to retrieve a list of available taxonomic groups in a JASPAR database release.
rba_jaspar_taxons(release = 2024, ...)A data frame with information of available species.
Numeric: (default = 2024) Which JASPAR database release to use? Available options are: 2024, 2022, 2020, 2018, 2016, and 2014.
rbioapi option(s). See rba_options's
arguments manual for more information on available options.
"GET https://jaspar.elixir.no/api/v1/taxon/"
Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059
Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804
Other "JASPAR":
rba_jaspar_collections(),
rba_jaspar_collections_matrices(),
rba_jaspar_matrix(),
rba_jaspar_matrix_search(),
rba_jaspar_matrix_versions(),
rba_jaspar_releases(),
rba_jaspar_sites(),
rba_jaspar_species(),
rba_jaspar_species_matrices(),
rba_jaspar_taxons_matrices(),
rba_jaspar_tffm(),
rba_jaspar_tffm_search()
# \donttest{
rba_jaspar_taxons(release = 2024)
# }
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