rbioapi (version 0.8.2)

rba_jaspar_tffm: Get a TF flexible models (TFFMs) information

Description

Using this function you can retrieve details and annotations of Transcription Factor flexible models (TFFMs) associated with a TFFM ID. If a base ID (i.e. without version suffix) was supplied, the latest version will be returned.

Usage

rba_jaspar_tffm(tffm_id, ...)

Value

A list that contains the TFFM's information and annotations.

Arguments

tffm_id

Character: A TF flexible model (TFFM) Identifier.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/fttm/{tffm_id}/"

References

• Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059

• Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

• JASPAR API Documentation

• Citations note on JASPAR website

See Also

Other "JASPAR": rba_jaspar_collections(), rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm_search()

Examples

# \donttest{
rba_jaspar_tffm("TFFM0056.3")
# }