rbioapi (version 0.8.2)

rba_uniprot_epitope_search: Search UniProt Epitopes

Description

Use this function to search epitope data associated to UniProt entities, using various criteria such as UniProt accession, epitope sequence, IEDB ID, and match score.

Usage

rba_uniprot_epitope_search(
  accession = NULL,
  epitope_sequence = NULL,
  iedb_id = NULL,
  match_score = NULL,
  ...
)

Value

A List where each element corresponds to one UniProt entity returned by your search query. The element itself is a sub-list containing all information that UniProt has about that entity.

Arguments

accession

UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.

epitope_sequence

(Character) Epitope's proteins sequence

iedb_id

(Numeric) EIDB epitope Identifier(s). You can supply up to 20 accession numbers.

match_score

Integer: Minimum alignment score for the antigen sequence and the target protein sequence.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/epitope"

See Also

Other "UniProt - Epitopes": rba_uniprot_epitope(), rba_uniprot_rna_edit()

Examples

# \donttest{
  rba_uniprot_epitope_search(accession = c("Q84ZX5", "P36222"))
# }
# \donttest{
  rba_uniprot_epitope_search(epitope_sequence = "DKKCIEWEKAQHGA")
# }
# \donttest{
  rba_uniprot_epitope_search(iedb_id = 20354)
# }