write.xlsx

The BIOM object to save to the file.

biom

outfile

Depth to rarefy to. See <code>rarefy</code> function for details.
Only use <code>depth</code> with <code>BIOM</code> files of type
'OTU table' and integer count values.

depth

Random seed to use in rarefying. See <code>rarefy</code> function
for details.

seed

Write data and summary information to a Microsoft Excel-compatible workbook.

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Features include reading/writing all 'BIOM' formats, rarefaction, alpha
diversity, beta diversity (including 'UniFrac'), summarizing counts by
taxonomic level, and sample subsetting. Standalone functions for
reading, writing, and subsetting phylogenetic trees are also provided.
All CPU intensive operations are encoded in C with multi-thread support.

Daniel P. Smith

rbiom

Read/Write, Transform, and Summarize 'BIOM' Data

write.xlsx function

<dl><dt>biom</dt>
<dd>The BIOM object to save to the file.</dd>
<dt>outfile</dt>
<dd>Path to the output xlsx file.</dd>
<dt>depth</dt>
<dd>Depth to rarefy to. See <code>rarefy</code> function for details.
Only use <code>depth</code> with <code>BIOM</code> files of type
'OTU table' and integer count values.</dd>
<dt>seed</dt>
<dd>Random seed to use in rarefying. See <code>rarefy</code> function
for details.</dd></dl>

Arguments

Write data and summary information to a Microsoft Excel-compatible workbook. — write.xlsx

<dl>

<dt>biom</dt>
<dd>The BIOM object to save to the file.</dd>


<dt>outfile</dt>
<dd>Path to the output xlsx file.</dd>


<dt>depth</dt>
<dd>Depth to rarefy to. See <code>rarefy</code> function for details.
Only use <code>depth</code> with <code>BIOM</code> files of type
'OTU table' and integer count values.</dd>


<dt>seed</dt>
<dd>Random seed to use in rarefying. See <code>rarefy</code> function
for details.</dd>

</dl>

write.xlsx: Write data and summary information to a Microsoft Excel-compatible workbook.

Description

Usage

Value

Arguments