documentation_dist_test

internal

A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.

Daniel P. Smith

rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

Alkek Center for Metagenomics and Microbiome Research 

documentation_dist_test function

<dl><dt>stat.by</dt>
<dd>The categorical or numeric metadata field over which
statistics should be calculated. Required.</dd>
<dt>test</dt>
<dd>Permutational test for accessing significance. Options are:<dl>
<dt><code>"adonis2"</code> - </dt>
<dd>Permutational MANOVA; <code>vegan::adonis2()</code>.</dd></dl></dd><dt><code>"mrpp"</code> - </dt>
<dd>Multiple response permutation procedure; <code>vegan::mrpp()</code>.</dd><dt><code>"none"</code> - </dt>
<dd>Don't run any statistics.</dd>
</dl>Abbreviations are allowed. Default: <code>"adonis2"</code>

Arguments

documentation_dist_test — documentation_dist_test

<dl>

<dt>stat.by</dt>
<dd>The categorical or numeric metadata field over which
statistics should be calculated. Required.</dd>


<dt>test</dt>
<dd>Permutational test for accessing significance. Options are:<dl>
<dt><code>"adonis2"</code> - </dt>
<dd>Permutational MANOVA; <code>vegan::adonis2()</code>.</dd>

<dt><code>"mrpp"</code> - </dt>
<dd>Multiple response permutation procedure; <code>vegan::mrpp()</code>.</dd>

<dt><code>"none"</code> - </dt>
<dd>Don't run any statistics.</dd>


</dl>Abbreviations are allowed. Default: <code>"adonis2"</code></dd>

</dl>

documentation_dist_test: documentation_dist_test

Description

Arguments