Visualises the observed SPD along with the simulation envelope generated from permTest, with regions of positive and negative deviations highlighted in red and blue.
# S3 method for SpdPermTest
plot(
x,
focalm = 1,
type = "spd",
calendar = "BP",
xlim = NA,
ylim = NA,
col.obs = "black",
col.env = rgb(0, 0, 0, 0.2),
lwd.obs = 0.5,
xaxs = "i",
yaxs = "i",
bbty = "f",
drawaxes = TRUE,
...
)A SpdPermTest class object. Result of random mark permutation test (see permTest)
Value specifying the name of the focal mark (group) to be plotted.
Whether to display SPDs ('spd') or rates of change ('roc'). Default is 'spd'.
Either 'BP' or 'BCAD'. Indicate whether the calibrated date should be displayed in BP or BC/AD. Default is 'BP'.
the x limits of the plot. In BP or in BC/AD depending on the choice of the parameter calender. Notice that if BC/AD is selected BC ages should have a minus sign (e.g. c(-5000,200) for 5000 BC to 200 AD).
the y limits of the plot.
Line colour for the observed SPD
Colour for the simulation envelope
Line width for the observed SPD
The style of x-axis interval calculation (see par)
The style of y-axis interval calculation (see par)
Display options; one between 'b','n',and 'f'. See details in plot.SpdModelTest.
A logical value determining whether the axes should be displayed or not. Default is TRUE.
Additional arguments affecting the plot
permTest; plot.SpdModelTest;