rdacca.hp (version 1.1-1)

plot.rdaccahp: Plot for a rdacca.hp object

Description

Plot for a rdacca.hp object

Usage

# S3 method for rdaccahp
plot(x, plot.perc = FALSE, color = NULL, ...)

Value

a ggplot object

Arguments

x

A rdacca.hp object.

plot.perc

Logical;if TRUE, the bar plot (based on ggplot2 package) of the percentage to individual effects of variables or groups towards total explained variation, the default is FALSE to show plot with original individual effects.

color

Color of variables.

...

unused

Author

Jiangshan Lai

Examples

library(vegan)
data(mite)
data(mite.env)
mite.hel <- decostand(mite, "hellinger")
avc<-rdacca.hp(mite.hel,mite.env,method="RDA",type="adjR2")
plot(avc)
plot(avc, plot.perc=TRUE)
avc<-rdacca.hp(mite.hel,mite.env[,1:3],method="RDA",type="adjR2",var.part=TRUE)
plot(avc,color = c("#8DD3C7", "#FFFFB3", "#BEBADA"))