phy_struct

object of class <code>phylo</code>

tree

two-dimensional <code>matrix</code> of mode <code>numeric</code>
with rows as types (species), columns as subcommunities, and each
element containing the relative abundance of types in each subcommunity
relative to the metacommunity as a whole. In the phylogenetic case, this
corresponds to the proportional abundance of historical species, which is
calculated from the proportional abundance of terminal taxa

partition

Converts an object into class <code>phylo</code> into class <code>phy_struct</code>.

Provides a framework for the measurement and partitioning of
the (similarity-sensitive) biodiversity of a metacommunity and its
constituent subcommunities. Richard Reeve, et al. (2016)
<arXiv:1404.6520v3>.

Sonia Mitchell

`$structure`	- each row denotes historical species, columns denote terminal taxa, and elements contain 'branch lengths'
`$tbar` - the average distance from root to tip for all terminal taxa	`$parameters`
- information associated with each historical species	`$tree`
- object of class `phylo`	`$structure`

phy_struct: Calculate phylogenetic structure matrix

Description

Usage

Arguments

Value