genotype


<code>genotype</code>: example data of <code>genotype</code> for each marker (rownames) 
and 60 strains such as recombinant inbred lines (RIL) (columnnames), 
with numeric values 1 and 0 (or A and B).
In total there are 5 chromosomes with 20cM in length for each chromosome.
In each chromosome, 20 markers are evenly distributed on each chromosome.
As an example, 10 percent (=6) samples were added as mislabeled sample by swapping.
<pre>
data(genotype)
genotype[1:5,1:5]</pre>
<table><tr><td>
            </td>
<td> Sample1 </td>
<td> Sample2 </td>
<td> Sample3   </td>
<td> Sample4   </td>
</tr><tr><td> Sample5 </td>
<td>
C1M1        </td>
<td> 1    </td>
<td> 0    </td>
<td> 0      </td>
</tr><tr><td> 1      </td>
<td> 0    </td>
<td>
C1M2        </td>
<td> 1    </td>
<td> 0    </td>
</tr><tr><td> 0      </td>
<td> 1      </td>
<td> 0    </td>
<td>
C1M3        </td>
<td> 1    </td>
</tr><tr><td> 0    </td>
<td> 0      </td>
<td> 1      </td>
<td> 0    </td>
<td>
C1M4        </td>
</tr><tr><td> 1    </td>
<td> 0    </td>
<td> 0      </td>
<td> 1      </td>
<td> 0    </td>
</tr><tr><td>
C1M5        </td>
<td> 1    </td>
<td> 0    </td>
<td> 0      </td>
<td> 1      </td>
</tr><tr><td> 0    </td>
<td>
            </td>
<td> Sample1 </td>
<td> Sample2 </td>
<td> Sample3   </td>
</tr></table>


datasets

Detecting mislabeled samples in genetic data.

Yang Li

reGenotyper

Detecting Mislabeled Samples in Genetic Data

genotype function

<code>genotype</code>: 120 markers by 100 samples.

genotype: Example genotype data

Description

Usage

Arguments

Format

Examples

	Sample1	Sample2	Sample3	Sample4
Sample5	C1M1	1	0	0
1	0	C1M2	1	0
0	1	0	C1M3	1
0	0	1	0	C1M4
1	0	0	1	0
C1M5	1	0	0	1
0		Sample1	Sample2	Sample3