readBrukerFlexData (version 1.2.2)

mqReadBrukerFlex: Reads mass spectrometry data into MALDIquant.

Description

Reads all mass spectrometry data in Bruker Daltonics' XMASS format in a specified path into MALDIquant-package MassSpectrum-class objects.

Usage

mqReadBrukerFlex(path, ...)

Arguments

path

Path to directory or a single fid file.

...

arguments to be passed to readBrukerFlexDir or readBrukerFlexFile

Value

• Returns a MassSpectrum-class object if path is/contains only one fid file. Returns a list of MassSpectrum-class objects if path contains multiple fid files.

Details

See readBrukerFlexDir or readBrukerFlexFile.

References

See website: http://strimmerlab.org/software/maldiquant/

See Also

readBrukerFlexDir, readBrukerFlexFile, MALDIquant-package, MassSpectrum-class

Examples

## load library
library("readBrukerFlexData");

## get examples directory
exampleDirectory <- system.file("Examples", package="readBrukerFlexData");

## read example spectra
spec <- mqReadBrukerFlex(file.path(exampleDirectory, "2010_05_19_Gibb_C8_A1"));

## plot spectra
par(mfrow=c(2, 1));
lapply(spec, function(x)plot(x));
par(mfrow=c(1, 1));