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reb (version 1.50.0)

Regional Expression Biases

Description

A set of functions to dentify regional expression biases

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Version

Version

1.50.0

License

GPL-2

Maintainer

Karl Dykema

Last Published

February 15th, 2017

Functions in reb (1.50.0)

fromRevIsh

Convert from revish strings to a matrix
rmAmbigMappings

Remove genes that map to multiple chromosomes from a chromLocation object
naMean

Wrapper function for the arithmetic mean
mcr.eset

Example exprSet and chromLocation objects
regmap

image function wrapper
absMax

Absolute Maxima
cset2band

cset2band
movt

movt
tBinomTest

binomial t-test
isAbnormal

Is a band 'abnormal'?
buildChromCytoband

Construct a chromLocation object from a cytoband environment
movbin

movbin
buildChromMap

A function to generate an instantiation of a chromLocation class
writeGFF3

Output of a GFF compliant table describing the enhanced and diminished chromosomal bands.
smoothByRegion

reb
revish

Creation of CGH (reverse in situ hybridization) style character strings
Hs.arms

Hs.arms
summarizeByRegion

Compute Summary Statistics of Genome Regions