# Load some data
data("recoup_test_data",package="recoup")
# Note: the figures that will be produced will not look
# realistic or pretty and will be "bumpy". This is because
# package size limitations posed by Bioconductor guidelines
# do not allow for a full test dataset. As a result, the input
# below is not an RNA-Seq dataset. Have a look at the
# vignette on how to test with more realistic data.
# Calculate coverages
testGenomeRanges <- makeGRangesFromDataFrame(df=test.genome,
keep.extra.columns=TRUE)
test.input <- coverageRnaRef(
test.input,
genomeRanges=test.exons,
helperRanges=testGenomeRanges,
flank=c(2000,2000)
)
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