getBiotypes

One of the supported <code>recoup</code> organisms
    See <code><a href="/link/recoup?package=recoup&version=1.0.2" rd-options="" data-mini-rdoc="recoup::recoup">recoup</a></code> for further information.

This function returns a character vector of Ensembl 
    biotypes for each supported organism. Mostly for 
    internal use, but can also be used to list the 
    biotypes and use some of them to subset initial 
    genomic regions to be profiled.

recoup calculates and plots signal profiles
    created from short sequence reads derived from Next
    Generation Sequencing technologies. The profiles
    provided are either sumarized curve profiles or heatmap
    profiles. Currently, recoup supports genomic profile
    plots for reads derived from ChIP-Seq and RNA-Seq
    experiments. The package uses ggplot2 and ComplexHeatmap
    graphics facilities for curve and heatmap coverage
    profiles respectively.

Panagiotis Moulos

recoup

An R package for the creation of complex genomic
    profile plots

getBiotypes function

One of the supported <code>recoup</code> organisms
    See <code><a href="recoup" rd-options="">recoup</a></code> for further information.

getBiotypes: List default Ensembl biotypes

Description

Usage

Arguments

Value

Examples