get_ncbi_taxonomy

Download and parse NCBI taxonomy records

Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.

Francois Keck

refdb

A DNA Reference Library Manager

get_ncbi_taxonomy function

<dl><dt>id</dt>
<dd>A vector of id for records in the NCBI Taxonomy database.</dd>
<dt>verbose</dt>
<dd>print information in the console.</dd></dl>

Arguments

Get NCBI taxonomy — get_ncbi_taxonomy

<dl>

<dt>id</dt>
<dd>A vector of id for records in the NCBI Taxonomy database.</dd>


<dt>verbose</dt>
<dd>print information in the console.</dd>

</dl>

get_ncbi_taxonomy: Get NCBI taxonomy

Description

Usage

Value

Arguments