igraph_from_taxo

Create a graph representation from a taxonomic classification
included in a reference
database. For this function to work, taxonomic fields must be set.

Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.

Francois Keck

refdb

A DNA Reference Library Manager

igraph_from_taxo function

<dl><dt>x</dt>
<dd>a reference database (tibble).</dd>
<dt>cols</dt>
<dd>an optional vector of column names to use a subset of columns.</dd></dl>

Arguments

Create a graph from a taxonomic table — igraph_from_taxo

<dl>

<dt>x</dt>
<dd>a reference database (tibble).</dd>


<dt>cols</dt>
<dd>an optional vector of column names to use a subset of columns.</dd>

</dl>

igraph_from_taxo: Create a graph from a taxonomic table

Description

Usage

Value

Arguments