refdb_clean_tax_remove_extra

Remove extra words from taxonomic names

Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.

Francois Keck

refdb

A DNA Reference Library Manager

refdb_clean_tax_remove_extra function

<dl><dt>x</dt>
<dd>a reference database.</dd>
<dt>cols</dt>
<dd>an optional vector of column names.
If <code>NULL</code> (default), the function is applied to the columns
associated with the <code>taxonomy</code> and <code>organism</code> fields.</dd></dl>

Arguments

Remove extra words from taxonomic names — refdb_clean_tax_remove_extra

<dl>

<dt>x</dt>
<dd>a reference database.</dd>


<dt>cols</dt>
<dd>an optional vector of column names.
If <code>NULL</code> (default), the function is applied to the columns
associated with the <code>taxonomy</code> and <code>organism</code> fields.</dd>

</dl>

refdb_clean_tax_remove_extra: Remove extra words from taxonomic names

Description

Usage

Value

Arguments

Details