refdb_clean_tax_remove_uncertainty

Remove terms indicating uncertainty in taxonomic names

Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.

Francois Keck

refdb

A DNA Reference Library Manager

refdb_clean_tax_remove_uncertainty function

<dl><dt>x</dt>
<dd>a reference database.</dd>
<dt>cols</dt>
<dd>an optional vector of column names.
If <code>NULL</code> (default), the function is applied to the columns
associated with the <code>taxonomy</code> and <code>organism</code> fields.</dd></dl>

Arguments

Marks of taxonomic uncertainty provided by specialists
are not without value. The consequences of their deletion
must be well understood by the user before using this function.

Warning

Remove terms indicating uncertainty in taxonomic names — refdb_clean_tax_remove_uncertainty

<dl>

<dt>x</dt>
<dd>a reference database.</dd>


<dt>cols</dt>
<dd>an optional vector of column names.
If <code>NULL</code> (default), the function is applied to the columns
associated with the <code>taxonomy</code> and <code>organism</code> fields.</dd>

</dl>

Marks of taxonomic uncertainty provided by specialists
are not without value. The consequences of their deletion
must be well understood by the user before using this function.

refdb_clean_tax_remove_uncertainty: Remove terms indicating uncertainty in taxonomic names

Description

Usage

Value

Arguments

Warning

Examples