calcFst: Caculate locus-wise and population \(F_{ST}\) values
Description
This procedure uses the method of Weir and Cockerham to estimate
\(\theta\) (\(F_{ST}\)) for a population with substructure
Usage
calcFst(Pop, subPopIdx = NULL)
Value
A vector of length \(n_{loci}+1\) with locus-wise
\(\theta\) values and an overall \(\theta\) value for the
population
Arguments
Pop
An object type 'population'
subPopIdx
If this vector is not null, then it must consist of
\(N\) elements with values from 1 to \(n_s\) representing which
subpopulation each member of Pop$profiles belongs to. If it is null
then it is assumed that the population consists of \(n_s\)
subpopulations of equal size \(N_s\) so that \(n_s\times N_s =
N\)
Author
James M. Curran
References
Weir, B.S., Genetic Data Analysis II, (1996) p.173--179,
Sinauer, Sunderland, MA.