rentrez (version 0.3.1)

entrez_fetch: Download data from NCBI databases

Description

Download data from NCBI databases

Usage

entrez_fetch(db, rettype, retmode = "text", config = NULL, ...)

Arguments

db

character Name of the database to use

rettype

character Format in which to get data (eg, fasta, xml...)

retmode

character Mode in which to recieve data, defaults to 'text'

...

character Additional terms to add to the request

config

vector configuration options passed to httr::GET

Value

• chracter string containing the file created

See Also

config for avaliable configs

Examples

katipo <- "Latrodectus katipo[Organism]"
katipo_search <- entrez_search(db="nuccore", term=katipo)
kaitpo_seqs <- entrez_fetch(db="nuccore", id=katipo_search$ids, rettype="fasta")