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rentrez (version 1.2.3)
'Entrez' in R
Description
Provides an R interface to the NCBI's 'EUtils' API, allowing users to search databases like 'GenBank'
and 'PubMed'
, process the results of those searches and pull data into their R sessions.
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Version
Version
1.2.3
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Install
install.packages('rentrez')
Monthly Downloads
17,498
Version
1.2.3
License
MIT + file LICENSE
Issues
43
Pull Requests
5
Stars
196
Forks
38
Repository
https://docs.ropensci.org/rentrez/ (website) https://github.com/ropensci/rentrez/
Maintainer
David Winter
Last Published
November 10th, 2020
Functions in rentrez (1.2.3)
Search all functions
entrez_db_links
List available links for records from a given NCBI database
entrez_citmatch
Fetch pubmed ids matching specially formatted citation strings
entrez_link
Get links to datasets related to records from an NCBI database
entrez_global_query
Find the number of records that match a given term across all NCBI Entrez databases
entrez_dbs
List databases available from the NCBI
entrez_db_searchable
List available search fields for a given database
entrez_post
Post IDs to Eutils for later use
entrez_db_summary
Retrieve summary information about an NCBI database
entrez_fetch
Download data from NCBI databases
entrez_info
Get information about EUtils databases
parse_pubmed_xml
Summarize an XML record from pubmed.
set_entrez_key
Set the ENTREZ_KEY variable to be used by all rentrez functions
rentrez
rentrez
entrez_summary
Get summaries of objects in NCBI datasets from a unique ID
entrez_search
Search the NCBI databases using EUtils
linkout_urls
Extract URLs from an elink object
extract_from_esummary
Extract elements from a list of esummary records