polar.cart.to.sphere.spherical
Convert polar projection in Cartesian coordinates to
spherical coordinates on sphere
Merge stitched points and edges
Save reconstruction data in MATLAB format
Plot the fractional change in length of mesh edges
Azimuthal equidistant projection
Flat plot of object
The deformation energy gradient function
Triangulate outline
The deformation energy function
Add new class to class vector of object
Return points on the unit circle
Ancillary function to place labels
Estimate of the log likelihood of the points mu given a
particular value of the concentration kappa
getGss.retinalReconstructedDataset
Get grouped variable with locations in spherical coordinates.
invert.sphere.to.hemisphere
Invert sphere to hemisphere
Find the optimal concentration for a set of data
Kernel density estimate on sphere using Fisherian density
with polar coordinates
RetinalReconstructedDataset
RetinalReconstructedDataset constructor
Put text on the polar plot
List datasets underneath a directory
Central angle between two points on a sphere
The deformation energy gradient function
Determine intersection between two lines
RetinalDataset constructor
Version of reconstruction file data format
flatplot.triangulatedOutline
Flat plot of TriangulatedOutline
Stitch together incisions and tears in an AnnotatedOutline
flatplot.reconstructedOutline
Flat plot of reconstructed outline
Process a dataset, saving results to disk
The FIRE algorithm
Get grouped variable with locations in spherical coordinates.
Remove tear from an AnnotatedOutline
Get spherical coordinates of tears.
getDssMean.reconstructedDataset
Karcher mean of datapoints in spherical coordinates
Add tear to an AnnotatedOutline
Flat plot of Dataset
Azimuthal conformal or stereographic or Wulff projection
Project mesh points in the flat outline onto a sphere
getIDs.reconstructedDataset
Get IDs of groups of data within a ReconstructedDataset
getSss.reconstructedDataset
Get transformed spherical coordinates of landmarks.
Kernel regression on sphere using Fisherian density with
polar coordinates
Get transformed spherical coordinates of landmarks.
projection.reconstructedDataset
Plot projection of reconstructed dataset
Compute the parent relationships for a set of tears
Kernel density estimate on sphere using Fisherian density
with Cartesian coordinates
Flat plot of outline
Ensure that the fixed point is in the rim, not a tear
Invert sphere about its centre
retistruct.batch.get.titrations
Get titrations from a directory of reconstructions
Name a landmark in a Dataset
Save reconstruction data
Convert barycentric coordinates of points in mesh on sphere
to cartesian coordinates
Get transformed spherical coordinates of datapoints
Vector norm
getGss.reconstructedDataset
Get grouped variable with locations in spherical coordinates.
Get coordinates of corners of pixels of image in spherical coordinates
Return strains edges are under in spherical retina
projection.reconstructedOutline
Projection of a reconstructed outline
retistruct.batch.analyse.summaries
Extract statistics from a directory containing
reconstruction directories.
Process a dataset with a time limit
Spherical plot of reconstructed outline
Cross validation estimate of the least squares error of the
points mu given a particular value of the concentration kappa
Karcher mean of datapoints in spherical coordinates
Optimise mapping
Return indicies of tear in AnnotatedOutline
getDssMean.retinalReconstructedDataset
Get transformed spherical coordinates of Karcher mean of
datapoints
Convert lattitude on sphere to radial variable in
area-preserving projection
Read a retinal dataset
getDss.retinalReconstructedDataset
Get transformed spherical coordinates of datapoints
retistruct.batch.analyse.summary
Extract statistics from the retistruct-batch.csv summary file
Label three outline point indicies as apicies and vertices of tear
Constructor for RecontructedDataset object
Get kernel density estimate of data points
Area of triangles on a sphere
Reconstruct a retina
sphere.cart.to.sphere.dualwedge
Convert from Cartesian to 'dualwedge' coordinates
sphericalplot.reconstructedOutline
Spherical plot of reconstructed outline
Constructor for a dataset
object.
Simplify an outline object by removing short edges
Get rim length of AnnotatedOutline
Check the whether directory contains valid data
Orthographic projection
Return a new version of the list in which any un-named elements
have been given standardised names
Extract summary data for a batch of reconstructions
RetinalReconstructedOutline
RetinalReconstructedOutline constructor
Read data points in CSV format
sphere.wedge.to.sphere.cart
Convert from 'wedge' to Cartesian coordinates
retistruct.batch.export.matlab
Export data from reconstruction data files to matlab
titrate.reconstructedOutline
Titrate values of phi0
compute.intersections.sphere
Find the intersection of a plane with edges of triangles on
a sphere
Read a retinal dataset in IJROI format
Check that tears are all in the correct direction
Read a retinal dataset in CSV format
retistruct.global.revision
Git short commit hash of Retistruct package
Lambert azimuthal equal area projection
remove.identical.consecutive.rows
Remove identical consecutive rows from a matrix
Rotate axis of sphere
flatplot.annotatedOutline
Flat plot of AnnotatedOutline
Karcher mean of landmarks in spherical coordinates
Read the reconstruction data from file
Retistruct check markup
Piecewise smooth function used in area penalty
sphere.spherical.to.polar.cart
Convert spherical coordinates on sphere to polar
projection in Cartesian coordinates
Print a figure to file
Stretch mesh
Read one of the Thompson lab's retinal datasets
Flat plot of retinal dataset
Optimise mapping
Plot projection of an object
sphericalplot.reconstructedDataset
Spherical plot of reconstructed outline
Area of triangles on a plane
Kernel regression on sphere using Fisherian density with
Cartesian coordinates
The identity transformation
Return index of tear
Get area of convex hull around data points on sphere
getDss.reconstructedDataset
Get transformed spherical coordinates of datapoints
Bring angle into range
azel.to.sphere.colattitude
Convert azimuth-elevation coordinates to spherical coordinates
retistruct.batch.plot.ods
Superposed plot of ODs on polar axes
Start the Retistruct GUI
Read the markup data
getSss.retinalReconstructedDataset
Get transformed spherical coordinates of datapoints
Flat plot of AnnotatedOutline
Karcher mean on the sphere
transform.image.reconstructedOutline
Transform an image into the reconstructed space
Outline constructor
sphere.cart.to.sphere.wedge
Convert from Cartesian to 'wedge' coordinates
Get kernel regression estimate of grouped data points
Kernel estimate over grid
Restore points to spherical manifold
retistruct.batch.plot.titrations
Plot titrations
Generate colours for strain plots
Create grid on projection of hemisphere onto plane
Determine indicies of triangles that are flipped
Determine indicies of triangles that are flipped
nameLandmark.retinalDataset
Name a landmark in a RetinalDataset
Set fixed point
sphere.cart.to.sphere.spherical
Convert from Cartesian to spherical coordinates
Get IDs of groups of data within a dataset
"Signed area" of triangles on a plane
kde.compute.concentration
Find the optimal concentration for a set of data
Get IDs of groups of data within a dataset
The deformation energy function
Remove intersections between adjacent segements in a closed path
Sinusoidal projection
sphere.spherical.to.sphere.cart
Convert from spherical to Cartesian coordinates
Constructor for AnnotatedOutline object
Reconstruct outline into spherical surface
Piecewise smooth function used in area penalty
getIms.reconstructedOutline
Get coordinates of corners of pixels of image in spherical
coordinates
Plot figures for a batch of reconstructions
Batch operation using the parallel package
Test for a potential optic disc
Save markup