FeatureSetCommon

<p>An FeatureSetCommon has functionality for retrieving
  sets of features (e.g. points or landmarks associated with an
  outline)</p>

Reconstructs retinae by morphing a flat surface with cuts (a
dissected flat-mount retina) onto a curvilinear surface (the standard retinal
shape). It can estimate the position of a point on the intact adult retina
to within 8 degrees of arc (3.6% of nasotemporal axis). The coordinates in
reconstructed retinae can be transformed to visuotopic coordinates.

David Sterratt

retistruct

Retinal Reconstruction Program

David C. Sterratt

Daniel Lyngholm

FeatureSetCommon function

<p></p><dl class="dl-horizontal">
<dt><code>data</code></dt><dd><p>List of matrices describing data</p></dd><p></p><p><dt><code>cols</code></dt><dd><p>Vector of colours for each data set</p></dd></p><p><dt><code>type</code></dt><dd><p>String giving type of feature set</p></dd>
</p></dl><p></p>

Public fields

<h3>Public methods</h3><p></p><p><ul>
<li><p><a href="/link/FeatureSetCommon%24getIndex()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$getIndex()"><code>FeatureSetCommon$getIndex()</code></a></p></li>
<li><p><a href="/link/FeatureSetCommon%24getIDs()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$getIDs()"><code>FeatureSetCommon$getIDs()</code></a></p></li>
<li><p><a href="/link/FeatureSetCommon%24setID()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$setID()"><code>FeatureSetCommon$setID()</code></a></p></li>
<li><p><a href="/link/FeatureSetCommon%24getFeature()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$getFeature()"><code>FeatureSetCommon$getFeature()</code></a></p></li>
<li><p><a href="/link/FeatureSetCommon%24getFeatures()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$getFeatures()"><code>FeatureSetCommon$getFeatures()</code></a></p></li>
<li><p><a href="/link/FeatureSetCommon%24getCol()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$getCol()"><code>FeatureSetCommon$getCol()</code></a></p></li>
<li><p><a href="/link/FeatureSetCommon%24clone()?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSetCommon$clone()"><code>FeatureSetCommon$clone()</code></a></p></li>
</ul>
</p><p></p><h3>Method <code>getIndex()</code></h3><p></p><p>Get numeric index of features
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$getIndex(fid)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>fid</code></dt><dd><p>Feature ID (string)</p></dd>
</dl></p><p></p><p></p><h3>Method <code>getIDs()</code></h3><p></p><p>Get IDs of features
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$getIDs()</pre></p><p></p><h3>Returns</h3><p></p><p>Vector of IDs of features</p><p></p><p></p><h3>Method <code>setID()</code></h3><p></p><p>Set name
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$setID(i, fid)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>i</code></dt><dd><p>Numeric index of feature</p></dd></dl></p><p><dt><code>fid</code></dt><dd><p>Feature ID (string)</p></dd>
</p><p></p><p></p><h3>Method <code>getFeature()</code></h3><p></p><p>Get feature by feature ID
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$getFeature(fid)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>fid</code></dt><dd><p>Feature ID string</p></dd>
</dl></p><p></p><h3>Returns</h3><p></p><p>Matrix describing feature</p><p></p><p></p><h3>Method <code>getFeatures()</code></h3><p></p><p>Get all features
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$getFeatures()</pre></p><p></p><p></p><h3>Method <code>getCol()</code></h3><p></p><p>Get colour in which to plot feature ID
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$getCol(fid)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>fid</code></dt><dd><p>Feature ID string</p></dd>
</dl></p><p></p><p></p><h3>Method <code>clone()</code></h3><p></p><p>The objects of this class are cloneable with this method.
</p><h3>Usage</h3><p></p><p><pre>FeatureSetCommon$clone(deep = FALSE)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>deep</code></dt><dd><p>Whether to make a deep clone.</p></dd>
</dl></p>

Methods

Class containing functionality common to <code><a rd-options='' href='FeatureSet'>FeatureSet</a></code>s and
  <code><a rd-options='' href='ReconstructedFeatureSet'>ReconstructedFeatureSet</a></code>s — FeatureSetCommon

Class containing functionality common to <code><a rd-options='' href='FeatureSet'>FeatureSet</a></code>s and
  <code><a rd-options='' href='ReconstructedFeatureSet'>ReconstructedFeatureSet</a></code>s

Class containing functionality common to <code><a rd-options="" href="/link/FeatureSet?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::FeatureSet">FeatureSet</a></code>s and
  <code><a rd-options="" href="/link/ReconstructedFeatureSet?package=retistruct&version=0.6.3" data-mini-rdoc="retistruct::ReconstructedFeatureSet">ReconstructedFeatureSet</a></code>s

FeatureSetCommon: Class containing functionality common to `FeatureSet`s and `ReconstructedFeatureSet`s

Description

Arguments

Public fields

Methods

Public methods

Method `getIndex()`

Usage

Arguments

Method `getIDs()`

Usage

Returns

Method `setID()`

Usage

Arguments

Method `getFeature()`

Usage

Arguments

Returns

Method `getFeatures()`

Usage

Method `getCol()`

Usage

Arguments

Method `clone()`

Usage

Arguments

Description

Arguments

Public fields

Methods

Public methods

Method getIndex()

Usage

Arguments

Method getIDs()

Usage

Returns

Method setID()

Usage

Arguments

Method getFeature()

Usage

Arguments

Returns

Method getFeatures()

Usage

Method getCol()

Usage

Arguments

Method clone()

Usage

Arguments

Method `getIndex()`

Method `getIDs()`

Method `setID()`

Method `getFeature()`

Method `getFeatures()`

Method `getCol()`

Method `clone()`