Learn R Programming

rfPred (version 1.10.0)

Assign rfPred functional prediction scores to a missense variants list

Description

Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to be connected on the Internet or to download the TabixFile and index (approximately 3.3 Go).

Copy Link

Version

Version

1.10.0

License

GPL (>=2 )

Maintainer

Hugo Varet

Last Published

February 15th, 2017

Functions in rfPred (1.10.0)

rfPred_scores

Assign functional prediction rfPred scores to human missense variants
rfPred-package

Assign functional prediction rfPred scores to human missense variants (random forest method based on SIFT, Polyphen2, PhyloP, LRT and Mutation Taster)
rfPred_scores_motor

Motor of rfPred_scores
example_GRanges

Toy example of GRanges object
variant_list_Y

Toy example of data.frame