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rgbif (version 0.6.0)
Interface to the Global Biodiversity Information Facility API
Description
A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility.
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Install
install.packages('rgbif')
Monthly Downloads
9,086
Version
0.6.0
License
CC0
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36
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173
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52
Repository
https://github.com/ropensci/rgbif
Maintainer
Scott Chamberlain
Last Published
April 17th, 2014
Functions in rgbif (0.6.0)
Search all functions
blanktheme
Custom ggplot2 theme
check_wkt
Check input WKT
occurrencecount
Counts taxon concept records matching a range of filters.
nodes
Nodes metadata.
dataset_metrics
Geta details on a dataset.
organizations
Organizations metadata.
datasets
Search for datasets and dataset metadata.
occ_metadata
Search for catalog numbers, collection codes, collector names, and institution codes.
gbifmap
Make a map to visualize GBIF occurrence data.
name_backbone
Lookup names in the GBIF backbone taxonomy.
gbifparser_verbatim
Parser for gbif data
providers
Get data providers and their unique keys.
togeojson
Convert spatial data files to GeoJSON from various formats.
suggestfields
Fields available in gbif_suggest function
gbifdata
Get data.frame from occurrencelist, occurrencelist_many, or densitylist.
occ_get
Get data for specific GBIF occurrences.
dataset_search
Search datasets in GBIF.
installations
Installations metadata.
gbifmap_dens
Make a simple map to visualize GBIF data density data
is.gbifdens
Check if object is of class gbifdens
datasetparser
Parser for gbif data
occurrencedensity
Returns summary counts of occurrence records by one-degree cell for a single taxon, country, dataset, data publisher or data network.
occ_search
Search for GBIF occurrences.
parseresults
Parse results from call to occurrencelist endpoint
stylegeojson
Style a data.frame prior to converting to geojson.
densitylist
The density web service provides access to records showing the density of occurrence records from the GBIF Network by one-degree cell.
taxrank
Get the possible values to be used for (taxonomic) rank arguments in GBIF API methods.
gist
Post a file as a Github gist
namelkupparser
Parser for name_usage endpoints, for fxns name_lookup and name_backbone
rgb_country_codes
Look up 2 character ISO country codes
print.gbiflist_na
Print summary of gbiflist_na class
print.gbiflist
Print summary of gbiflist class
occurrenceget
Get individual records for a given occurrence record.
get_credentials
Get Github credentials from use in console
typestatus
Type status options for GBIF searching
create_gist
Function that takes a list of files and creates payload for API
occurrencelist
Occurrencelist searches for taxon concept records matching a range of filters.
density_spplist
The density web service provides access to records showing the density of occurrence records from the GBIF Network by one-degree cell.
taxonsearch
Search for taxa in GBIF.
gbifmap_list
Make a simple map to visualize GBIF point data.
is.gbiflist_na
Check if object is of class gbiflist_na
ldfast
Replacement function for ldply that should be faster.
elevation
Get elevation for lat/long points from a data.frame or list of points.
rgbif-deprecated
Deprecated functions in rgbif
dataset_suggest
Suggest datasets in GBIF.
resources
Get data resources and their unique keys.
gbifxmlToDataFrame
Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3
name_lookup
Lookup names in all taxonomies in GBIF.
occurrencelist_all
Occurrencelist_all carries out an occurrencelist query for a single name and all its name variants according to GBIF's name matching.
networks
Networks metadata.
occ_count
Get number of occurrence records.
name_suggest
A quick and simple autocomplete service that returns up to 20 name usages by doing prefix matching against the scientific name. Results are ordered by relevance.
count_facet
Facetted count occurrence search.
taxoncount
Search by taxon to retrieve number of records in GBIF.
parsenames
Parse taxon names using the GBIF name parser.
occurrencelist_many
occurrencelist_many is the same as occurrencelist, but takes in a vector of species names.
commas_to_periods
Convert commas to periods in lat/long data
print.gbifdens
Print summary of gbifdens class
name_usage
Lookup details for specific names in all taxonomies in GBIF.
gbif_capwords
Capitalize the first letter of a character string.
gbifparser
Parser for gbif data
taxonget
Get taxonomic information on a specific taxon or taxa in GBIF by their taxon concept keys.
rgbif
rgbif: A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility.
isocodes
Table of country two character ISO codes, and GBIF names
is.gbiflist
Check if object is of class gbiflist