rgr (version 1.1.0)

thplot2: Display a Thompson-Howarth Plot of Duplicate Measurements, Alternate Input

Description

Function to prepare data stored in alternate forms from that expected by function thplot1 for its use. For further details see 'x' in Arguments below.

Usage

thplot2(x, name = deparse(substitute(x)), ifzero = 0.01, 
	xlow = NA, xhih = NA, yhih = NA, rsd = 5, ptile = 95, main = "", 
	ifalt = FALSE, ...)

Arguments

x

a column vector from a matrix or dataframe, x[1], ..., x[2*n]. The default is that the first n members of the vector are the first measurements and the second n members are the duplicate measurements. If the measurements alternate, i.e. dupl

name

a title can be displayed with the results, e.g., name = "Magnetic Susceptibility". If this field is undefined the character string for x is used as a default.

ifzero

as the Thompson-Howarth plot is log-scaled values of zero cannot be displayed, therefore the parameter ifzero has to be specified. A suitable choice is a value one order of magnitude lower than the value of the detection limit. A default va

xlow

if is desired to produce plots with consistent scaling this may be achieved by defining xlow, xhih and yhih, the ylow, the ylow value is set equal to ifzero. Enter an appropria

xhih

enter an appropriate value of xhih to ensure all data are displayed on all plots.

yhih

enter an appropriate value of yhih to ensure all data are displayed on all plots.

rsd

to assist in QA/QC inspection a target precision may be defined as a RSD%, a default of rsd = 5 is provided. See comments concerning RSD in details below.

ptile

defines the confidence interval for a line to be drawn on the plot above which only 100 - ptile% of the points should plot if the defined target RSD is being met. A default of ptile = 95 is provided. The function counts the number of points f

main

a title may be added optionally above the display, e.g., main = "Stanley (2003) Test Data"

ifalt

set ifalt = TRUE to accommodate alternating sets of paired observations.

...

further arguments to be passed to methods. For example, the size of the axis scale annotation can be change by setting cex.axis, the size of the axis titles by seetting cex.lab, and the size of the plot title by setting ce

Details

This function expects the RSD% as a measure of measurement repeatability (precision), which is more familiar to the current generation of applied geochemists, rather than the precision at the 2 Standard Deviation level. The necessary calculations to conform with the Thompson and Howarth procedure are made internally. For further details see thplot1. If the data are as n duplicate pairs, x1 and x2, use function thplot1.

See Also

thplot1, ltdl.fix.df

Examples

## Make test data available
data(ms.data2)
attach(ms.data2)

## Display the default plot
thplot2(MS, name = "Magnetic Susceptibility", 
	main = "Stanley (2003) Test Data")

## Detach test data
detach(ms.data2)

## Make test data available
data(ms.data3)
attach(ms.data3)

# Display a Thompson-Howarth plot for a RSD of 7.5\% and draw
# the limit for a confidence interval of 90\%
thplot2(MS, name = "Magnetic Susceptibility", rsd = 7.5, ptile = 90,
	main = "Stanley (2003) Test Data", ifalt = TRUE)

## Detach test data
detach(ms.data3)