IlluminaBodymap: Sample RNA-Seq Counts data

Description

A collection of counts datasets from Illumina Human Bodymap 2.0, one sample each for adipose, blood, heart and skeletal_muscle. Four technical replicates are created by downsampling the original Illumina data. Alignment was performed by Ensembl, so the source of this dataset is ftp://ftp.ensembl.org/pub/release-70/bam/homo_sapiens/genebuild . Each of the four Human Bodymap samples are downsampled four times. Read counts are collected with Bedtools CoverageBed and a RefSeq exon annotation.

Usage

data(IlluminaBodymap)

Arguments

Value

A numeric matrix of read-counts from RNA-Seq, measured at transcripts by coverageBed.

Format

A data frame with 37653 observations on the following 16 variables.

adipose.1: Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.
adipose.2: Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.
adipose.3: Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.
adipose.4: Illumina Human Bodymap 2 'Adipose' sample, downsampled to one-third.
blood.1: Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.
blood.2: Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.
blood.3: Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.
blood.4: Illumina Human Bodymap 2 'Blood' sample, downsampled to one-third.
heart.1: Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.
heart.2: Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.
heart.3: Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.
heart.4: Illumina Human Bodymap 2 'Heart' sample, downsampled to one-third.
skeletal_muscle.1: Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.
skeletal_muscle.2: Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.
skeletal_muscle.3: Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.
skeletal_muscle.4: Illumina Human Bodymap 2 'Skeletal Muscle' sample, downsampled to one-third.

Source

http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-513/

References

Illumina Human Bodymap 2.0. Ensembl etc.

Examples

Run this code

data(IlluminaBodymap)
head(IlluminaBodymap,30)

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