log_stirling2

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS)
algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences
from multiple sequence alignments in FASTA format.
The implementation includes improved defaults and plotting capabilities
and unlike the original 'MATLAB' version removes singleton SNPs by default.

Gerry Tonkin-Hill

rhierbaps

Clustering Genetic Sequence Data Using the HierBAPS Algorithm

log_stirling2 function

<dl><dt>n</dt>
<dd>number of objects</dd>
<dt>k</dt>
<dd>number of partitions</dd></dl>

Arguments

log_stirling2 — log_stirling2

<dl>

<dt>n</dt>
<dd>number of objects</dd>


<dt>k</dt>
<dd>number of partitions</dd>

</dl>

log_stirling2: log_stirling2

Description

Usage

Value

Arguments