save_lml_logs

Saves the log marginal likelihoods to a text file.

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS)
algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences
from multiple sequence alignments in FASTA format.
The implementation includes improved defaults and plotting capabilities
and unlike the original 'MATLAB' version removes singleton SNPs by default.

Gerry Tonkin-Hill

rhierbaps

Clustering Genetic Sequence Data Using the HierBAPS Algorithm

save_lml_logs function

<dl><dt>hb.object</dt>
<dd>The resulting object from runnign hierBAPS</dd>
<dt>file</dt>
<dd>The file you would like to save the log output to.</dd></dl>

Arguments

save_lml_logs — save_lml_logs

<dl>

<dt>hb.object</dt>
<dd>The resulting object from runnign hierBAPS</dd>


<dt>file</dt>
<dd>The file you would like to save the log output to.</dd>

</dl>

save_lml_logs: save_lml_logs

Description

Usage

Arguments

Examples