Print the chosen few items of a long vector
Pairwise jaccard/overlap coefficient can be calculated efficiently using matrix
Pairwise overlap coefficient of binary matrix by column
Get default font family
Shorten strings to strings with a fix width of characters
Close connections to all loggers
This function closes all open connections set up by loggers
It is automatically run at the end of the R session (setup by registerLog
) Cumulative overlap coefficient
Ensure the Truth of R Expressions and Print Defined Error Message if NOT
Proportion of cumulative sum over sum
Get a factor vector for a data.frame
head/tail function for matrix or data.frame
Cut a vector of numbers into interval factors.
Convert a long-format data frame into matrix
Convert factor columns in a data.frame into character strings
Cumulative Jaccard Index
Create a directory if it does not exist, and then make sure the creation was
successful.
Test whether two matrices have the same numerica values given certain
accuracy
Transform a list of character strings into a data.frame
Get the base and extension(s) of file name(s)
Pairwise overlap coefficient of lists
Calculate the Jaccard Index between two vectors
Tell whether a character string is a Roche compound ID
Replace NA with FALSE
Sort numeric factor levels by values
Calculate pairwise overlap coefficients between each pair of items in a list
Open a device as a file preparing for plotting in the file
Quietly runs a system command
Scale a matrix by row
KEEP ROWS WITH THE MAXIMUM STATISTIC
Ordered factor
Calculate pairwise Jaccard Indices between each pair of items in a list
Case-insensitive match and pmatch
Reverse setdiff
Keep silent by suppressing warnings and messages
Shorten strings to a given number of characters
Match a given vector to column names of a data.frame or matrix
Match a column in data.frame to a master vector
Transform a matrix into a long-format data.frame
System user name
Print messages conditional on the verbose level
Print head and tail elements of a vector
Count tokens by splitting strings
Compare two vectors by set operations
Test whether two matrices are identical by values and by dim names
Checks existing directory
Tell whether an object is an error
Multiple matching
Operations for multiple sets
Transform p-values to continuous scores with the quantile function of the normal distribution
Print a decimal number in procent format
Calculate pairwise distances between each pair of items in a list
Overlap coefficient, also known as Szymkiewicz-Simpson coefficient
Relevel a factor by a named or unnamed vector.
Transform p-values to continuous scores with the absolute-log10 transformation
A temporary directory which (1) every machine in the cluster has access to
and (2) has sufficient space
Print BEDAinfo object
The functions registerLog
and doLog
provide a simple mechanism
to handle loggings (printing text messages to files or other types of
connections) in R.
Transform p-values to continuous scores
A temporary file which (1) every machine in the cluster has access to and
(2) there is sufficient space
Remove columns
Sort matrix by dim names
Reload a package
Load a library mutedly and quit (die) in case of failing
Tokenize strings by character
Remove temporary files at a specified time interval from now
Repeat garbage-collecting until all resource is freed
ribiosUtils
Relevel a factor by a unnamed vector.
Remove invariable columns from a data frame or matrix
Relevel a factor by a named vector.
Replace column names in data.frame
mergeInfreqLevelsByCumsumprop
Merge infrequent levels by setting the threshold of the proportion of
cumulative sum over sum a.k.a. cumsumprop
Subset a data.frame by column name, allowing differences in cases
Write text as log to a connection
sortAndFilterByCumsumprop
Sort a numeric vector and filter by a threshold of cumsumprop
Sort data.frame rows by values in specified columns
Extract core identifiers from Roche compound IDs
Prepare R for an interactive script
Rearrange columns to put some columns to far left
Encode a password
Decode password with function implemented with pwencode
S3 method for row-scaling
Multiple identical
Quitely Quit with Messages
Functions for command-line Rscript debugging
Trim leading and tailing spaces from string
Summarizing rows/columns by a factor
Length of unique elements in a vector
Make a vector free of NA and unique
Check dimensionality of design matrix
Convert string-valued data frame or matrix into a numeric matrix
Check dimensionality of contrast matrix
Print BEDA project information
Testing whether several objects are all identical with each other
Check whether file(s) exist
Assert whether the required column names exist
Check dimensionality of both design and contrast matrix
Translate BiOmics-Pathology pstore path to URL