riboCoding-class: Class "riboCoding"
Description
The riboCoding class contains a set of coordinates defining
coding sequences, a set of replicate data for the experimental
samples, an array of ribosome footprint abundances for each
coding sequence split by size class and frame, and a similar array
describing the abundance of unique sequences aligning within each
coding sequence.
Slots
CDS:- Object of class
"GRanges" defining the
coordinates of coding sequences. hits:- An array describing the abundances of ribosome
footprints, split by size class and frame (relative to coding start)
for each of the coding sequences defined in the `CDS' slot.
unqHits:- An array describing the abundances of unique
sequences of ribosome footprints, split by size class and frame
(relative to coding start) for each of the coding sequences defined in
the `CDS' slot.
replicates:- A factor defining the replicate structure
of the samples for which data are held. Replicate samples will have
the same level in this factor.
Methods
Methods `[' and `show' are defined for this class.