filter_clusters

Filters the full list of clusters by keeping only those with greater
than or equal to min_terms # of terms.

Fast 'C++' agglomerative hierarchical clustering
algorithm packaged into easily callable R functions, designed
to help cluster biological terms based on how
similar of genes are expressed in their activation.

Junguk Hur

richCluster

Fast, Robust Clustering Algorithms for Gene Enrichment Data

Sarah Hong

Jane Kim

filter_clusters function

<dl><dt>all_clusters</dt>
<dd>A dataframe containing the merged seeds with column named `ClusterIndices`.</dd>
<dt>min_terms</dt>
<dd>An integer specifying the minimum number of terms required in a cluster.</dd></dl>

Arguments

Filter Clusters by Number of Terms — filter_clusters

<dl>

<dt>all_clusters</dt>
<dd>A dataframe containing the merged seeds with column named `ClusterIndices`.</dd>


<dt>min_terms</dt>
<dd>An integer specifying the minimum number of terms required in a cluster.</dd>

</dl>

filter_clusters: Filter Clusters by Number of Terms

Description

Usage

Value

Arguments