plot_network_graph

This function visualizes a single cluster as a network graph.

Fast 'C++' agglomerative hierarchical clustering
algorithm packaged into easily callable R functions, designed
to help cluster biological terms based on how
similar of genes are expressed in their activation.

Junguk Hur

richCluster

Fast, Robust Clustering Algorithms for Gene Enrichment Data

Sarah Hong

Jane Kim

plot_network_graph function

<dl><dt>cluster_result</dt>
<dd>The result from the clustering function.</dd>
<dt>cluster_num</dt>
<dd>The cluster number to plot.</dd>
<dt>distance_matrix</dt>
<dd>The distance matrix used for clustering.</dd>
<dt>valuetype_list</dt>
<dd>A list of value types (e.g., "Pvalue_1", "Padj_1") to use for node coloring.</dd></dl>

Arguments

Plot Network Graph for a Cluster — plot_network_graph

<dl>

<dt>cluster_result</dt>
<dd>The result from the clustering function.</dd>


<dt>cluster_num</dt>
<dd>The cluster number to plot.</dd>


<dt>distance_matrix</dt>
<dd>The distance matrix used for clustering.</dd>


<dt>valuetype_list</dt>
<dd>A list of value types (e.g., "Pvalue_1", "Padj_1") to use for node coloring.</dd>

</dl>

plot_network_graph: Plot Network Graph for a Cluster

Description

Usage

Value

Arguments