ritis
Installation
Stable, CRAN version
install.packages("ritis")Dev version
devtools::install_github("ropensci/ritis")library("ritis")Solr service
matches only monomials
itis_search(q = "nameWOInd:/[A-Za-z0-9]*[%20]{0,0}*/")
#> Source: local data frame [10 x 26]
#>
#> tsn nameWInd nameWOInd unit1 usage
#> <chr> <chr> <chr> <chr> <chr>
#> 1 51 Schizomycetes Schizomycetes Schizomycetes invalid
#> 2 50 Bacteria Bacteria Bacteria valid
#> 3 52 Archangiaceae Archangiaceae Archangiaceae invalid
#> 4 53 Pseudomonadales Pseudomonadales Pseudomonadales valid
#> 5 54 Rhodobacteriineae Rhodobacteriineae Rhodobacteriineae invalid
#> 6 55 Pseudomonadineae Pseudomonadineae Pseudomonadineae invalid
#> 7 56 Nitrobacteraceae Nitrobacteraceae Nitrobacteraceae invalid
#> 8 57 Nitrobacter Nitrobacter Nitrobacter valid
#> 9 65 Nitrosomonas Nitrosomonas Nitrosomonas valid
#> 10 70 Thiobacteriaceae Thiobacteriaceae Thiobacteriaceae invalid
#> Variables not shown: unacceptReason <chr>, credibilityRating <chr>,
#> completenessRating <chr>, currencyRating <chr>, kingdom <chr>, rankID
#> <chr>, rank <chr>, hierarchySoFar <chr>, hierarchySoFarWRanks <chr>,
#> hierarchyTSN <chr>, synonyms <chr>, synonymTSNs <chr>, otherSource
#> <chr>, acceptedTSN <chr>, comment <chr>, createDate <chr>, updateDate
#> <chr>, _version_ <dbl>, taxonAuthor <chr>, vernacular <chr>, parentTSN
#> <chr>.matches only binomials
itis_search(q = "nameWOInd:/[A-Za-z0-9]*[%20]{1,1}[A-Za-z0-9]*/")
#> Source: local data frame [10 x 24]
#>
#> tsn nameWInd nameWOInd unit1
#> <chr> <chr> <chr> <chr>
#> 1 58 Nitrobacter agilis Nitrobacter agilis Nitrobacter
#> 2 59 Nitrobacter flavus Nitrobacter flavus Nitrobacter
#> 3 60 Nitrobacter oligotrophis Nitrobacter oligotrophis Nitrobacter
#> 4 61 Nitrobacter polytrophus Nitrobacter polytrophus Nitrobacter
#> 5 62 Nitrobacter punctata Nitrobacter punctata Nitrobacter
#> 6 64 Nitrobacter winogradskyi Nitrobacter winogradskyi Nitrobacter
#> 7 66 Nitrosomonas europaea Nitrosomonas europaea Nitrosomonas
#> 8 67 Nitrosomonas groningensis Nitrosomonas groningensis Nitrosomonas
#> 9 68 Nitrosomonas javenensis Nitrosomonas javenensis Nitrosomonas
#> 10 69 Nitrosomonas monocella Nitrosomonas monocella Nitrosomonas
#> Variables not shown: unit2 <chr>, usage <chr>, unacceptReason <chr>,
#> credibilityRating <chr>, kingdom <chr>, rankID <chr>, rank <chr>,
#> hierarchySoFar <chr>, hierarchySoFarWRanks <chr>, hierarchyTSN <chr>,
#> synonyms <chr>, synonymTSNs <chr>, otherSource <chr>, acceptedTSN <chr>,
#> comment <chr>, createDate <chr>, updateDate <chr>, _version_ <dbl>,
#> taxonAuthor <chr>, parentTSN <chr>.REST API
Get accepted names for a TSN
accepted_names(tsn = 504239)
#> Source: local data frame [1 x 3]
#>
#> acceptedName acceptedTsn author
#> <chr> <chr> <chr>
#> 1 Dasiphora fruticosa 836659 (L.) Rydb.Get common names for a TSN
common_names(tsn = 183833)
#> Source: local data frame [3 x 3]
#>
#> commonName language tsn
#> <chr> <chr> <chr>
#> 1 African hunting dog English 183833
#> 2 African Wild Dog English 183833
#> 3 Painted Hunting Dog English 183833Full hierarchy for a TSN
hierarchy_full(tsn = 37906)
#> Source: local data frame [60 x 5]
#>
#> parentname parenttsn rankname taxonname tsn
#> <chr> <chr> <chr> <chr> <chr>
#> 1 Kingdom Plantae 202422
#> 2 Plantae 202422 Subkingdom Viridiplantae 954898
#> 3 Viridiplantae 954898 Infrakingdom Streptophyta 846494
#> 4 Streptophyta 846494 Superdivision Embryophyta 954900
#> 5 Embryophyta 954900 Division Tracheophyta 846496
#> 6 Tracheophyta 846496 Subdivision Spermatophytina 846504
#> 7 Spermatophytina 846504 Class Magnoliopsida 18063
#> 8 Magnoliopsida 18063 Superorder Asteranae 846535
#> 9 Asteranae 846535 Order Asterales 35419
#> 10 Asterales 35419 Family Asteraceae 35420
#> .. ... ... ... ... ...Meta
- Please report any issues or bugs.
- License: MIT
- Get citation information for
ritisin R doingcitation(package = 'ritis') - Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.