rmRNAseq (version 0.1.0)

design: Reparameterized Design Matrix

Description

This is a reparameterized matrix from the original design matrix that includes time, line, time x line such that each column of the reparameterized design matrix corresponds to a test of interest such as line main effect, time2 - time0, time6 - time0, time24 - time0, and interaction effect of timei - time0 with line. When using this reparameterized design matrix in the analysis, for example, regression coefficients corresponding to its second column (line2) represents the Line main effect.

Usage

design

Arguments

Format

A design matrix with 8 columns Intercept, line2, time2, time6, time24, linetime2, linetime6, linetime24.

Examples

Run this code
# NOT RUN {
data(design)
colnames(design)
head(design)
# }

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