rmRNAseq (version 0.1.0)

res: Data Containing Results of Our Proposed Method Applying to RFI RNA-seq data

Description

This data set contains outputs of voom, glsCAR1 and pqvalue of the tests for interested contrasts when analyzing the RFI RNA-seq data using our proposed method.

Usage

res

Format

A list with 3 components

ori.res

a list consisting of 2 components: v, which is a voom output including several components; newlm, which is the output from glsCAR1

pqvalue

a list of 2 components pv and qv. pv is a data frame of pvalues for each test such as line2 time; qv is a data frame of corresponding q-values of the above p-values, calculated using the method by Nettleton 2006.

Examples

# NOT RUN {
data(res)
names(res)
dim(res$ori.res$v)
colnames(res$ori.res$v)
colnames(res$ori.res$newlm)
colnames(res$pqvalue$pv)
colnames(res$pqvalue$qv)
# }