# NOT RUN {
data(res)
data(covset)
v <- res$ori.res$v
v$E <- v$E[1:50,]
v$weights <- v$weights[1:50,]
Subject <- covset$ear
Time <- covset$time
ncores <- 1
C.matrix <- list()
C.matrix[[1]] <- limma::makeContrasts(line2, levels = design)
C.matrix[[2]] <- limma::makeContrasts(time2, levels = design)
C.matrix[[3]] <- limma::makeContrasts(time6, levels = design)
C.matrix[[4]] <- limma::makeContrasts(time24, levels = design)
C.matrix[[5]] <- limma::makeContrasts(linetime2, levels = design)
C.matrix[[6]] <- limma::makeContrasts(linetime6, levels = design)
C.matrix[[7]] <- limma::makeContrasts(linetime24, levels = design)
C.matrix[[8]] <- limma::makeContrasts(time2, time6, time24, levels = design)
C.matrix[[9]] <- limma::makeContrasts(linetime2,linetime6, linetime24, levels = design)
names(C.matrix) <- c("line2", "time2", "time6", "time24",
"linetime2", "linetime6", "linetime24",
"time", "int")
beta0 <- NULL
print.progress <- FALSE
voomglsout <- rmRNAseq:::voomgls_CAR1(v, Subject, Time, ncores,
C.matrix, beta0, print.progress)
# }
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