rmetasim (version 3.1.14)

landscape.mismatchdist: Calculate a mismatch distribution for a locus in a landscape

Description

Calculate mismatch distribution from a landscape based upon the number of seqregating sites.

Usage

landscape.mismatchdist(Rland,lnum=1)

Arguments

lnum

locus number to calculate mismatch upon

Rland

the Rmetasim landscape object

Value

A matrix with num loci columns and num populations rows. Each element reflects the estimated theta for that population x locus combination

Details

Calculates a mismatch distribution for DNA-sequence-based loci.

Examples

# NOT RUN {
  exampleland <- landscape.new.example()
  exampleland <- landscape.simulate(exampleland, 4)
  misdist <- landscape.mismatchdist(exampleland,3) #will produce       
  misdist                                          #ridiculous output
# }