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rms (version 2.0-2)

rms Package

Description

Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. rms is a collection of about 180 functions that assist and streamline modeling, especially for biostatistical and epidemiologic applications. It also contains new functions for binary and ordinal logistic regression models and the Buckley-James multiple regression model for right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models. rms works with almost any regression model, but it was especially written to work with binary or ordinal logistic regression, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, generalized least squares for serially or spatially correlated observations, generalized linear models, and quantile regression.

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Version

Install

install.packages('rms')

Monthly Downloads

26,751

Version

2.0-2

License

GPL (>= 2)

Maintainer

Frank E Harrell Jr

Last Published

September 7th, 2009

Functions in rms (2.0-2)

anova.rms

Analysis of Variance (Wald and F Statistics)
bj

Buckley-James Multiple Regression Model
survfit.cph

Cox Predicted Survival
predict.lrm

Predicted Values for Binary and Ordinal Logistic Models
matinv

Total and Partial Matrix Inversion using Gauss-Jordan Sweep Operator
psm

Parametric Survival Model
rms

rms Methods and Generic Functions
survplot

Plot Survival Curves and Hazard Functions
fastbw

Fast Backward Variable Selection
Glm

rms Version of glm
Rq

rms Package Interface to quantreg Package
summary.rms

Summary of Effects in Model
groupkm

Kaplan-Meier Estimates vs. a Continuous Variable
print.cph.fit

Print cph.fit
residuals.lrm

Residuals from a Logistic Regression Model Fit
Gls

Fit Linear Model Using Generalized Least Squares
plot.Predict

Plot Effects of Variables Estimated by a Regression Model Fit
residuals.ols

Residuals for ols
ols

Linear Model Estimation Using Ordinary Least Squares
pphsm

Parametric Proportional Hazards form of AFT Models
datadist

Distribution Summaries for Predictor Variables
robcov

Robust Covariance Matrix Estimates
cr.setup

Continuation Ratio Ordinal Logistic Setup
Function

Compose an S Function to Compute X beta from a Fit
latexrms

LaTeX Representation of a Fitted Model
survest.psm

Parametric Survival Estimates
pentrace

Trace AIC and BIC vs. Penalty
plot.xmean.ordinaly

Plot Mean X vs. Ordinal Y
rms.trans

rms Special Transformation Functions
lrm.fit

Logistic Model Fitter
Predict

Compute Predicted Values and Confidence Limits
val.prob

Validate Predicted Probabilities
predab.resample

Predictive Ability using Resampling
validate.ols

Validation of an Ordinary Linear Model
rmsMisc

Miscellaneous Design Attributes and Utility Functions
cph

Cox Proportional Hazards Model and Extensions
validate.cph

Validation of a Fitted Cox or Parametric Survival Model's Indexes of Fit
print.cph

Print cph Results
validate

Resampling Validation of a Fitted Model's Indexes of Fit
contrast.rms

General Contrasts of Regression Coefficients
bplot

3-D Plots Showing Effects of Two Continuous Predictors in a Regression Model Fit
survfit.formula

Compute a Survival Curve for Censored Data
validate.lrm

Resampling Validation of a Logistic Model
gendata

Generate Data Frame with Predictor Combinations
which.influence

Which Observations are Influential
ie.setup

Intervening Event Setup
bootcov

Bootstrap Covariance and Distribution for Regression Coefficients
val.surv

Validate Predicted Probabilities Against Observed Survival Times
rmsOverview

Overview of rms Package
lrm

Logistic Regression Model
validate.rpart

Dxy and Mean Squared Error by Cross-validating a Tree Sequence
hazard.ratio.plot

Hazard Ratio Plot
sensuc

Sensitivity to Unmeasured Covariables
survest.cph

Cox Survival Estimates
predictrms

Predicted Values from Model Fit
print.ols

Print ols
rms-internal

Internal rms functions
specs.rms

rms Specifications for Models
vif

Variance Inflation Factors
residuals.cph

Residuals for a cph Fit
calibrate

Resampling Model Calibration
nomogram

Draw a Nomogram Representing a Regression Fit
latex.cph

LaTeX Representation of a Fitted Cox Model